PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04835.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 146aa    MW: 16604.1 Da    PI: 6.8
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04835.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.61.9e-094261941
                             HHHHHHHHHHHHHT-EEEEEEE- CS
                   SRF-TF 19 gilKKAeELSvLCdaevaviifs 41
                              + KKA+ELS+LC++++a++ifs
  Sme2.5_04835.1_g00004.1  4 SLSKKANELSILCGVKIAILIFS 26
                             678*******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.288138IPR002100Transcription factor, MADS-box
PfamPF003198.6E-9332IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-11359IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MLKSLSKKAN ELSILCGVKI AILIFSIGSQ PFLFGNPHVE SVVHDFLEAN QPTVPSYYMG  60
RKKKIEENED KGKSVKGNFK YRLSEDFKLT NAERLEKLNQ EIKKLEDQLN EEIGFLQNVF  120
GFEDPKPMLE MNVASSSTIP AHWLSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015160190.14e-68PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM1DEI34e-68M1DEI3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000877671e-67(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-10AGAMOUS-like 29